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Running the OneCellPipe software in the Amazon cloud

Running the OneCellPipe software in the Amazon cloud This is a sub-page of the multi-page documentation for the OneCellPipe pipeline of OneCellBio. Here are more detailed instruction for running OneCellPipe on an single machine in the…
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Installing the software required for the OneCellPipe system

Installing the software required for the OneCellPipe system Here are more detailed instruction for installing and running the OneCellPipe software and its requirements. These instructions are for a Linux Ubuntu system where…
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Common question about the OneCellPipe system

A collection of potential questions and error message the OneCellPipe pipeline of OneCellBio.
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Creating a Singularity image when Docker is misbehaving

Creating new image files for Docker and for Singularity failed on the AWS Ubuntu machine, but worked without issue using Vagrant on the Mac.
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Updating the OneCellPipe image

In order to update data or software of the OneCellPipe software the Docker and Singularity container will have to be re-created. Here are some instructions for this process.
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