Running the OneCellPipe software on your own machine
Here are more detailed instruction for installing and running OneCellPipe on your own machine. For a Linux Ubuntu system you can follow the steps below, for other systems, please adjust the commands accordingly or run the software on a virtual machine system.
We are assuming you have sudo rights (administrator privileges) on the system.
Please adjust accordingly if you are using a different flavor of a Unix-based operating system!
Part 1: Installing the software
Install required libraries with a few easy steps.
Part 2: Run the test pipeline
Use the sample data provided to test that everything is working.
Part 3: Process your own data
Point the pipeline to your own directory of FASTA files:
nextflow onecellpipe.nf --dir run1-fasta-files