Running the OneCellPipe software on your own machine

Running the OneCellPipe software on your own machine This is a sub-page of the multi-page documentation for the OneCellPipe pipeline of OneCellBio. Here are more detailed instruction for installing and running OneCellPipe on your…
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Using the OneCellPipe pipeline

Using the OneCellPipe pipeline This is a sub-page of the multi-page documentation for the OneCellPipe pipeline of OneCellBio. The configuration files If you run into trouble or your setup is somewhat special, the…
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More tips for running the OneCellPipe

This is a sub-page of the multi-page documentation for the OneCellPipe pipeline of OneCellBio with additional tips.
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Analysing inDrop raw data with the OneCellPipe pipeline

Analysing inDrop raw data with the OneCellPipe pipeline In short Described here is  a software wrapper around the indrops software for processing single-cell sequencing data generated using 1CellBio's inDrop sequencing technology. The software…
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RNA-Seq data quality scores

There are different ways to encode the quality scores in FASTQ files from Next-generation sequencing machines. This is important to find out before using the data and to convert between formats if…
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