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Bioinformatics work notes
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Bioinformatics work notes

Category: software

Posted December 29, 2018January 7, 2020Posted in bioinformatics, freelancing, software, technologybioinformatics, freelancing, software, technology

Life as a Bioinformatics Freelancer: The tools

Some information on what technology I found useful for doing my work for different projects as a consulting bioinformatics scientist.

Posted April 18, 2018March 29, 2020Posted in bioinformatics, container, software, technology, unixbioinformatics, container, software, technology, unix

Using Container Software

Docker and Singularity are very appealing software systems to run different operating systems or reproducible analysis steps by using “containers”. Here is a quick intro to get you started.

Posted November 20, 2017April 19, 2018Posted in bioinformatics, database, softwarebioinformatics, database, software

NoSQL Databases

Originally developed for large-scale web applications, nosql databases like to see themselves as next generation dbs and are usingĀ “not only sql”.

Posted September 29, 2017March 29, 2020Posted in software, unixsoftware, unix

Detect user’s OS using bash

Here is an approach to detect the user’s operating system using a bash script. This might be useful during installation routines of your software.

Posted September 18, 2017September 26, 2017Posted in genome informatics, softwaregenome informatics, software

Create BigWig files with DeepTools

To display data as bar graphs along the genome e.g. in the UCSC genome browser, you can create BigWig files. DeepTools is a powerful library that can also help with this.

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