Command-line NGS data munging

Notes about working with fasta / fastq files on the Unix command line.

Software Requirements Specification

For any large software project (i.e. one that requires more than a few scripts performing…

BCL files

Notes about blc files, written as part of the primary analysis of Illumina sequencing machines.

Sequence Mappability & Alignability

Sequence uniqueness within the genome plays an important part when attempting to map short sequence…