Bioinformatics work notes

Navigating the Genome

Life as a Bioinformatics Freelancer: The tools

Some information on what technology I used as a consulting bioinformatics scientist.
Read More: Life as a Bioinformatics Freelancer: The tools
Life as a Bioinformatics Freelancer: Finding work

Some ideas for bioinformatics freelancers to find work and advertise themselves to…
Read More: Life as a Bioinformatics Freelancer: Finding work
Encoding information with barcodes

Labeling samples with barcodes can make working with large sample numbers easier…
Read More: Encoding information with barcodes
Using Container Software

Docker and Singularity are very appealing software systems to run different operating…
Read More: Using Container Software
Checking files & directories in your Bash script

A quick reminder of the test flags you can use in your…
Read More: Checking files & directories in your Bash script
Indrops config 2

Indrops config 2 An example for running the OneCellPipe pipeline of OneCellBio with a pre-defined configuration file…
Read More: Indrops config 2
Allow another user to connect to my EC2 cloud machine

A way to allow a friend to help you with your Amazon…
Read More: Allow another user to connect to my EC2 cloud machine
Onecellpipe processes execution timeline

Onecellpipe processes execution timeline Elapsed time: 13m 44s
Read More: Onecellpipe processes execution timeline
Running the OneCellPipe software in the Amazon cloud

Running the OneCellPipe software in the Amazon cloud This is a sub-page…
Read More: Running the OneCellPipe software in the Amazon cloud
Installing the software required for the OneCellPipe system

Installing the software required for the OneCellPipe system Here are more detailed…
Read More: Installing the software required for the OneCellPipe system
Common question about the OneCellPipe system

A collection of potential questions and error message the OneCellPipe pipeline of OneCellBio.
Read More: Common question about the OneCellPipe system
Creating a Singularity image when Docker is misbehaving

Creating new image files for Docker and for Singularity failed on the…
Read More: Creating a Singularity image when Docker is misbehaving