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Bioinformatics work notes
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Bioinformatics work notes

Category: unix

Using Container Software

Posted April 18, 2018March 29, 2020Posted in bioinformatics, container, software, technology, unix

Docker and Singularity are very appealing software systems to run different operating systems or reproducible analysis steps by using “containers”. Here is a quick intro to get you started.

Checking files & directories in your Bash script

Posted March 22, 2018June 7, 2021Posted in unix

A quick reminder of the test flags you can use in your bash script to check files before you use them.

Allow another user to connect to my EC2 cloud machine

Posted March 13, 2018March 29, 2020Posted in cloud computing, unix

When you get stuck with a problem a friend might be able to help you with you will need to allow him access to your Amazon EC2 cloud machine. Here’s one way to to this.

Detect user’s OS using bash

Posted September 29, 2017March 29, 2020Posted in software, unix

Here is an approach to detect the user’s operating system using a bash script. This might be useful during installation routines of your software.

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